Showing : repeated measures • reset
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dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream variancePartition limma differential expression repeated measures
updated 4.6 years ago by 50k • written 4.6 years ago by ▴ 20
7
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9
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LIMMA: interpreting interaction terms in an unbalanced factorial design with repeated measures
LIMMA FACTORIAL REPEATED MEASURES differential gene expression
8.7 years ago • updated 8.6 years ago robert.maughan • 0
6
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Incorporating subject ID as random effect for repeated measures RNA-Seq analysis
limma rna-seq mixed model repeated measures
updated 5.7 years ago by 50k • written 5.7 years ago by ▴ 270
2
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5
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SVA for repeated measures design
SVA deseq2 repeated measures
updated 4.6 years ago by ★ 3.3k • written 4.7 years ago by • 0
0
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4
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592
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DESeq2 for repeated/clustered samples
deseq2 repeated measures
updated 4.4 years ago by 42k • written 4.4 years ago by • 0
1
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Time series experiment analysis in DEseq2 without T=0 and three independent experiments with linked samples
deseq2 rnaseq repeated measures time series design formula
updated 4.3 years ago by 42k • written 4.3 years ago by ▴ 10
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Repeated Measures, Within-Subject, Between-Groups RNAseq Analysis
edgeR rnaseq repeated measures
updated 6.1 years ago by ★ 7.9k • written 6.1 years ago by • 0
0
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DESeq2 - How to study time course experiment taking subject variability into account?
deseq2 repeated measures time course
updated 6.3 years ago by 42k • written 6.3 years ago by • 0
0
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0
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Model in metagenomeSeq
repeated measures
8.6 years ago PJ • 0
9 results • Page 1 of 1
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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